GatExplorer - Genomic and Transcriptomic Explorer | Tool name | GatExplorer - Genomic and Transcriptomic Explorer |
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| URL | http://bioinfow.dep.usal.es/xgate/principal.php |
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| Important features | GATExplorer is an integrated database that combines genomic/transcriptomic visualization with nucleotide-level probe mapping. |
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| Citations | RisueF1o A, Fontanillo C, Dinger ME, De Las Rivas J. GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts,
exons and ncRNAs. BMC Bioinformatics. 2010 Apr 29;11:221. PubMed PMID: 20429936;
PubMed Central PMCID: PMC2875241.
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Comments | Gene information includes chromosome location and gene description. |
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| Function | Exon detail, Exon detail: sequence, Intron detail, Intron detail: sequence, Graphical display of transcripts, Predicted protein sequences, Expression information, Gene Information, Probe set details, Number of transcripts, Species, Finds alternative splicing in human, Finds alternative splicing in rat, Finds alternative splicing in mouse |
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| Category | |
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| Input file format | Gene name, keyword, Probe set, sequence, Genome coordinates, probsets,microarray and level of mapping |
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| Output file format | |
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| Limitation | |
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